Step 1:
Vaisheshika philosophy classifies reality into Padarthas (categories).
Step 2:
The traditional sequence is:
\[
\text{Dravya} \rightarrow \text{Guna} \rightarrow \text{Karma}
\rightarrow \text{Samanya} \rightarrow \text{Vishesha}
\]
Step 3:
\[
C \rightarrow B \rightarrow D \rightarrow E \rightarrow A
\]
Step 4:
Hence, the correct arrangement is:
\[
\boxed{\text{(3) C, B, D, E, A}}
\]