Step 1: Recall the formula for trailing zeros in \(n!\).
The number of trailing zeros in \(n!\) is determined by the number of factors of \(10\).
Since
\[
10=2\times5
\]
and factors of \(2\) are more than factors of \(5\), we only count the number of factors of \(5\).
So, the number of trailing zeros in \(n!\) is
\[
\left\lfloor \frac{n}{5}\right\rfloor+
\left\lfloor \frac{n}{25}\right\rfloor+
\left\lfloor \frac{n}{125}\right\rfloor+
\left\lfloor \frac{n}{625}\right\rfloor+
\cdots
\]
Step 2: Check \(n=4009\).
\[
\left\lfloor \frac{4009}{5}\right\rfloor=801
\]
\[
\left\lfloor \frac{4009}{25}\right\rfloor=160
\]
\[
\left\lfloor \frac{4009}{125}\right\rfloor=32
\]
\[
\left\lfloor \frac{4009}{625}\right\rfloor=6
\]
\[
\left\lfloor \frac{4009}{3125}\right\rfloor=1
\]
Now adding,
\[
801+160+32+6+1=1000
\]
Thus, \(4009!\) ends in exactly \(1000\) zeros.
Step 3: Verify that it is exact.
For \(n=4010\),
\[
\left\lfloor \frac{4010}{5}\right\rfloor=802
\]
This would increase the number of zeros to more than \(1000\).
So, \(4010!\) does not have exactly \(1000\) zeros.
Hence, among the given options,
\[
n=4009
\]
Step 4: Final conclusion.
Therefore,
\[
\boxed{4009}
\]
which corresponds to option (3).