Step 1: Define secondary structure.
The secondary structure of a protein involves the local folding patterns such as \( \alpha \)-helices and \( \beta \)-sheets formed by the backbone interactions of the protein's amino acid sequence.
Step 2: Conclusion.
Thus, the secondary structure refers to the \( \alpha \)-helical backbone and similar structures.
Final Answer:
\[
\boxed{A}
\]