Step 1: Understanding the Concept:
Subcellular organelle fractionation employs specific organellar marker enzymes to verify purity and integrity.
Step 2: Detailed Explanation:
Standard subcellular diagnostic marker enzymes:
1. Lysosome: Acid Phosphatase (orthophosphoric-monoester phosphohydrolase, active at $pH \approx 4.5-5.0$).
2. Mitochondria (Inner Membrane): Cytochrome c Oxidase Succinate Dehydrogenase.
3. Endoplasmic Reticulum: Glucose-6-Phosphatase.
4. Peroxisome: Catalase Urate Oxidase.
5. Golgi Apparatus: Galactosyltransferase.
6. Plasma Membrane: $5'$-Nucleotidase $\text{Na}^+/\text{K}^+$-ATPase.
Step 3: Final Answer:
Therefore, the marker enzyme of lysosome is Acid phosphatase, matching option (C).