Step 1:
Nyāya philosophy accepts four valid means of knowledge.
Step 2:
Pratyakşa, Anumāna, and Upamāna are accepted by Nyāya.
Step 3:
Anupalabdhi and Arthāpatti are mainly accepted in other philosophical systems.
Step 4:
Thus, the correct set among the options is:
\[
A,\; C,\; E
\]
Hence, the correct answer is:
\[
\boxed{\text{(3) A, C, E Only}}
\]