Step 1: ATP from Acetyl-CoA.
One molecule of Acetyl-CoA entering the Krebs cycle produces
\[
\boxed{12\ \text{ATP}}
\]
(using the classical ATP calculation followed in NCERT-based examinations).
Step 2: ATP from PEP.
PEP first produces one ATP during its conversion to pyruvate and then pyruvate enters respiration.
Hence,
\[
1+2+12=15\ \text{ATP}.
\]
Therefore,
\[
\boxed{\text{PEP }=15\ \text{ATP}.}
\]
Step 3: ATP from Pyruvic acid.
Pyruvate is converted to Acetyl-CoA producing
\[
1\ \mathrm{NADH}=3\ \text{ATP},
\]
followed by
\[
12\ \text{ATP}
\]
from the Krebs cycle.
Thus,
\[
3+1+12=16\ \text{ATP}.
\]
Hence,
\[
\boxed{\text{Pyruvic acid }=16\ \text{ATP}.}
\]
Therefore, the sequence is
\[
\boxed{12,\;15,\;16.}
\]
Hence, the correct option is
\[
\boxed{(C).}
\]