Concept:
The relationship between duty (\(D\)), base period (\(B\)) and delta (\(\Delta\)) is
\[
\boxed{
\Delta=\frac{8.64B}{D}
}
\]
where
\[
\Delta=\text{Depth of water (m)},
\]
\[
B=\text{Base period (days)},
\]
\[
D=\text{Duty (hectares/cumec)}.
\]
Step 1: Write the given data.
\[
B=100\text{ days}
\]
\[
D=1000\text{ hectares/cumec}
\]
Step 2: Calculate the depth of water.
Using
\[
\Delta=\frac{8.64\times100}{1000}
=0.864\text{ m}
\]
Converting into centimetres,
\[
0.864\times100=86.4\text{ cm}
\]
Hence,
\[
\boxed{\Delta=86.4\text{ cm}}
\]
Therefore, the correct option is
\[
\boxed{(C)\;86.4\text{ cm}.}
\]