Step 1: Hardy-Weinberg equation.
Let \( p \) be the frequency of allele \( A_1 \) and \( q \) be the frequency of allele \( A_2 \). According to Hardy-Weinberg equilibrium, we know:
\[
p^2 + 2pq + q^2 = 1
\]
The frequency of the genotype \( A_1 A_1 \) is \( p^2 = 0.01 \), so:
\[
p = \sqrt{0.01} = 0.1
\]
Step 2: Frequency of allele \( A_2 \).
Since \( p + q = 1 \), we have:
\[
q = 1 - p = 1 - 0.1 = 0.9
\]
Step 3: Conclusion.
Thus, the frequency of allele \( A_2 \) is \( \boxed{0.1} \).